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Red Flags: 
= character 
= injury
| Rk | Player | School | Rating | Red Flags |
| 1. | Geno Smith | West Virginia | — | — |
| 2. | Matt Barkley | USC | — | — |
| 3. | Tyler Wilson | Arkansas | — | — |
| 4. | Ryan Nassib | Syracuse | — | — |
| 5. | Tyler Bray* | Tennessee | — | — |
| 6. | Zac Dysert | Miami OH | — | — |
| 7. | Mike Glennon | N.C. State | — | — |
| 8. | Landry Jones | Oklahoma | — | — |
| 9. | Matt Scott | Arizona | — | — |
| 10. | Colby Cameron | Louisiana Tech | — | — |
| 11. | Nick Florence | Baylor | — | — |
| 12. | Sean Renfree | Duke | — | — |
| 13. | E.J. Manuel | Florida State | — | — |
| 14. | Brad Sorensen | Southern Utah | — | — |
| 15. | Jordan Rogers | Vanderbilt | — | — |
| 16. | Matt McGloin | Penn State | — | — |
| 17. | Collin Klein | Kansas State | — | — |
| 18. | Alex Carder | Western Michigan | — | — |
| 19. | Seth Doege | Texas Tech | — | — |
| 20. | Casey Brockman | Murray State | — | — |