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Red Flags: 
= character 
= injury
| Rk | Player | School | Rating | Red Flags |
| 1. | Geno Smith | West Virginia | – | – |
| 2. | Matt Barkley | USC | – | – |
| 3. | Tyler Wilson | Arkansas | – | – |
| 4. | Ryan Nassib | Syracuse | – | – |
| 5. | Tyler Bray* | Tennessee | – | – |
| 6. | Zac Dysert | Miami OH | – | – |
| 7. | Mike Glennon | N.C. State | – | – |
| 8. | Landry Jones | Oklahoma | – | – |
| 9. | Matt Scott | Arizona | – | – |
| 10. | Colby Cameron | Louisiana Tech | – | – |
| 11. | Nick Florence | Baylor | – | – |
| 12. | Sean Renfree | Duke | – | – |
| 13. | E.J. Manuel | Florida State | – | – |
| 14. | Brad Sorensen | Southern Utah | – | – |
| 15. | Jordan Rogers | Vanderbilt | – | – |
| 16. | Matt McGloin | Penn State | – | – |
| 17. | Collin Klein | Kansas State | – | – |
| 18. | Alex Carder | Western Michigan | – | – |
| 19. | Seth Doege | Texas Tech | – | – |
| 20. | Casey Brockman | Murray State | – | – |
